PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G001500.3
Common NameB456_001G001500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 364aa    MW: 40910.2 Da    PI: 5.2232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G001500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000243963123
                        EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                        y+C+ C+k ++++  + +H+++  H
  Gorai.001G001500.3 39 YSCGLCDKGYRSSKAYSQHLKSraH 63
                        99******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-63875No hitNo description
SMARTSM003550.453963IPR015880Zinc finger, C2H2-like
PfamPF121714.8E-63963IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.2653968IPR007087Zinc finger, C2H2
PROSITE patternPS0002804163IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-6123197No hitNo description
PfamPF127562.3E-25138239IPR015880Zinc finger, C2H2-like
SMARTSM0035525187214IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVKLNQVAGV PGVTEALFLA RQAALAEEKD KQNETPMLYS CGLCDKGYRS SKAYSQHLKS  60
RAHIAQASQH PEEEKAAIIK PFIRRAVNKP PQPRDTNDEE SDDDWVEVDP DEDLASGDEM  120
DIDNGEETGQ EELDPCCCFM CDLKHDTIES CVVHMHKFHG FFIPDVEYLK NPEGLLIYLG  180
LKVKRDFICL YCNERCHPFT SLEAVRKHMA AKGHCKVHYG DGDEDEEAEL EEFYDYSSSY  240
VDDWGKQLVA VGDKDSTVEL GGGSELIITR KSDEGIMSKT LGSREYSRYY RQSPRPSPAN  300
NMAITAALAS RYRSMGLATV QSKEQIVRMK VMKAMNRSGV ETMRTKVGMK NNVIQNLPKN  360
VPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5apo_y5e-19138339164378CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477804.10.0PREDICTED: zinc finger protein 622-like
SwissprotQ8H1G51e-159REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLA0A0D2LRF70.0A0A0D2LRF7_G
STRINGVIT_04s0008g02540.t011e-179(Vitis vinifera)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]